Structure
Activities
Data and Tools
To participate
| Home |
Structure
|
Activities
|
Data and Tools
|
To participate
|
Login |
|
Functional
Annotation of
ANimal
Genomes (FAANG) Project
— A coordinated international action to accelerate Genome to Phenome
|
| Zoom: | The on-line sessions were completed. | Contact: | Tuggle, Christopher (cktuggle iastate.edu)
|
Program(All times are US Eastern time) |
Recordings | |
| Feb 5 | Generating Single Cell Transcriptomic Data on Agricultural Model Systems
Organizers: Marc Libault/Herve Acloque organizers |
|
| 11:00-11:05 | Welcome, Session objective, Instructions to participants. Herve Acloque, INRAe and Marc Libault, University of Missouri | |
| 11:05-11:30 | "Comparing single nucleus sequencing approaches to study maize leaf and floral development.". Samuel Lieboff, Oregon State University, Corvallis, USA | |
| 11:30-11:55 | "Which single-cell methods for which biological questions: strengths and Weaknesses". Adrien Dufour, NeuroDiderot, INSERM, Universite Paris Cite, Paris, France | 
|
| 11:55-12:20 | "Cell-type specific gene expression and function in Maize". Sunil Kenchanmane Raju, University of California, Riverside, USA | |
| 12:20-12:30 | Q&A for the speakers. | |
| Feb 12 | Submitting, sharing and accessing single cell data and meta-data
Organizers: Sunita Kumari, Irene Papatheodorou, Doreen Ware |
|
| 11:00-11:05 | Session objective, Instructions to participants. Sunita Kumari, Cold Spring Harbor Lab, NY, USA | |
| 11:05-11:25 | "Archiving of single-cell data at NCBI". Emily Clough, National Center for Biotechnology Information, Bethesda, USA | |
| 11:25-11:45 | "Single-cell data ingestion and metadata preparation through Annotare". Silvie Fexova, European Bioinformatics Institute, Hinxton, UK |
|
| 11:45-12:00 | "COPO for submitting data and metadata to ENA". Felix Shaw, Earlham Institute, Norwich, UK |
|
| 12:00-12:30 | Q&A for the speakers. | |
| March 5 | Strategies for assigning cell identity in single-cell datasets
Organizers: Fiona McCarthy/Ben Cole |
|
| 11:00-11:05 | Session objective, Introduction of speakers, Instructions to participants. Ben Cole Lawrence Berkeley National Laboratory and Fiona McCarthy University of Arizona. | |
| 11:05-11:30 | "Orthologous marker groups reveal broad cell identity conservation across plant single-cell transcriptomes". Song Li, Virginia Polytechnic Institute and State University, USA |
|
| 11:30-11:55 | "CellTypist and CellHint: towards automated annotation and integration of single-cell data". Chaun Xu, Cambridge Stem Cell Institute, Cambridge, UK |
|
| 11:55-12:05 | Q&A for the speakers | |
| 12:05-12:30 | Community discussion about assigning cell identity in single-cell data. | |
| March 12 | The use of single cell data for advancing Genome 2 Phenome.
Organizers: Chris Tuggle, Wes Warren |
|
| 11:00-11:05 | Session objective, Introduction of speakers, Instructions to participants. Wes Warren, University of Missouri. | |
| 11:05-11:30 | "Cell type Expression phenotyping from deconvolution of bulk RNAseq data". Chris Tuggle, Iowa State University, Ames, USA. |
|
| 11:30-11:55 | "The sc-eQTLGen consortium framework: a federated pipeline for genotype- and phenotype-based association analyses". Monique van der Wijst, Groningen University Medical Center, Groningen, The Netherlands. |
|
| 11:55-12:05 | Q&A for the speakers. | |
| 12:05-12:30 | Community discussion about assigning cell identity in single-cell data | |
| © 2014-2025 FAANG Consortium | Contact: faang@iastate.edu |
